MotifCut - Program for finding Regulatory Motifs (TFBS's),

For more information go to:

This application provides a simple, user friendly interface that gives a graphical representaion of found motifs as a PSSM and in a Motif-Graph format. Visual output also includes locations in the promoter regions where motifs where found.

This application is in Beta version 0.1.

Additional information could be found here.


This program is free software. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.


Click here to download the MotifCut Mac application.

Please report any problems to fratkin (at) cs (dot) stanford (dot) edu.


Copyright (C) 2006 Eugene Fratkin, Brian Naughton.

Jointly Serfim Batzoglou and Douglas Brutlag labs, Stanford University.